Course syllabus

Jump to today

Welcome to the MVE510 - Introduction to bioinformatics. This is course home page contains all the information you need to participate and complete the course.

The  course will be held at Chalmers campus with physical lectures and computer exercises.

 

Teachers

Erik Kristiansson, examiner, course administrator, lecturer
Juan Salvador Inda Diaz, computer exercise assistant
David Lund, computer exercise assistant

 

Student representatives (preliminary)

Maya Awada
Tringa Berisha
Porya Habibollahi
Filippa Kruse
Laleh Varghaei

 

Course aims, plan and schedule

Syllabus with course aims

Course plan (updated 2022-11-28)

 

Course material

Please refer to the course plan for lecture-by-lecture reading instructions.

Lecture notes

Papers

The following scientific papers are a part of the literature of this course. 

Extra exercises

Optional course book

Xinkun Wang, Next-Generation Sequencing Data Analysis, CRC Press, ISBN 9781482217889. The course covers chapters 2-5, 7-9, and 13. 

 

Computer exercises

The course contains four compulsory computer exercises. Computer exercise 1 is examined at the scheduled exercise. Computer exercise 2, 3 and 4 should be handed in as written reports. The computer exercises should be made in groups of maximum two persons.

 

Software you need to install if you work from your own computer

Note that you can connect to the computers at Chalmers from remote. Please refer to https://it.portal.chalmers.se/itportal/Faq/RemoteAccess?setlang=en for full details. All software should be available for the computers in SalA as well as the computer rooms in the Chemistry and Math building.

 

Guidelines for writing and submitting reports

The reports submitted as a group (of maximum two persons) through the Canvas course page. The report should be either in PDF or WORD-format. All of the code necessary should be included in the end of the report as an Appendix. Please double check that the sumibbted code works as intended. Don't forget to add the names and Swedish social security number for all persons in the group at the front page. You only need to submit one report per group.

The reports should contain answers to all the questions posed in the exercise sheet. The answers should almost always have some motivation, meaning that even though the question could be answered with a yes or a no, we require a motivation why. Example question: "Do you see any differences?" Describe the observed differences (if the answer is yes), and not only a yes or a no. When you have been asked to generate a figure, this figure should be included in the report. The reports do not need an introduction, method, results, or discussion section, but should include some information about what has been done. Example: “When doing the quality assessment using fastqc, we saw that…”.

Good luck!


Exam

  • 12 January 2023

Previous exams


Examination
This  course is examined based on,

  • Written exam: 08:30 on January 12, 2023. This gives you 5 points and determines your grade in the course.
  • Four compulsory computer exercises. When you have passed all four of them you earn 2.5 points. 

 

Course summary:

Date Details Due