TMS016/MSA301 Spatial statistics and image analysis
This page contains the program of the course: lectures and computer labs. Other information, such as learning outcomes, teachers, literature and examination, are in a separate course PM.
Program
The schedule of the course is in TimeEdit.
The course has two lectures and two computer exercises each week. Details for these are given in the schedule below, which will be updated during the course. For the lectures, the chapters covered in the books are listed, where LN denotes the lecture notes and HS denotes the Handbook of spatial statistics and EL The Elements of Statistical Learning.
The original plan was that lectures would be in room MVF26 and the computer exercises in room MVF25. However, due to the Corona virus all teaching is now planned to be performed remotely. More about that later.
Lectures and ExercisesLink
The information below will be updated and extended on an ongoing basis, currently the information on Lecture 1-11 and Computer exercises 1-11 are up-to-date
Time | Lecture | Computer exercise | ||
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Week 1/13 | Monday 10:00-11:45 |
L1 |
Introduction L1-2020, LN pages 1-22, see also pages 1-8 of Glasbey and Horgan 1995, Chapter 5, and |
|
Monday 13:15-15:00 |
E1 | Basic image processing | ||
Wednesday 10:00-11:45 |
L2 | Spatial random processes L2-2020, LN pages 69-78, see also L2-2019. | ||
Wednesday 13:15-15:00 |
E2 | Gaussian fields | ||
Week 2/14 | Monday 10:00-11:45 |
L3 |
OLS, GLS and ML estimation L3-2020, LN pages 78-85, see also L3-2019 . |
|
Monday 13:15-15:00 |
E3 | Estimation and kriging | ||
Wednesday 10:00-11:45 |
L4 |
Pattern recognition L4-2020, LN pages 22-38, see also L4-2019 |
||
Wednesday 13:15-15:00 |
E4 | Continue working on exercise 3 | ||
Week 3/17 | Monday 10:00-11:45 |
L5 |
Pattern recognition, cont. MAmasterth, L5-2020, LN pages 38-52, see also L5-2019 |
|
Monday 13:15-15:00 |
E5 | Image reconstruction using GMRFs | ||
Wednesday 10:00-11:45 |
L6 | Neural nets, MichaelNielsen2019, L6-2020, LN pages 52-58, see also L6-2019 | ||
Wednesday 13:15-15:00 |
E6 | Image segmentation using mixture models | ||
Week 4/18 | Monday 10:00-11:45 |
L7 | Support vector machines, Markov random fields, Point processes L7-2020, LN pages 56-59, 60-67, 86-90, see also L7-2019 | |
Monday 13:15-15:00 |
E7 | Image filtering | ||
Wednesday 10:00-11:45 |
L8 | Point process analysis, Marked point processes, Warping and matching, Two-colour microrarrays L8-2020, LN pages 90-109, see also L8-2019 | ||
Wednesday 13:15-15:00 |
E8 | Simulation of MRFs | ||
Week 5/19 | Monday 10:00-11:45 |
L9 | Two-dimensional electrophoresis, Point processes with noise: forestry applications L9-2020, LN pages110-129, see also L9-2019 | |
Monday 13:15-15:00 |
E9 | Estimation and classification using MRFs | ||
Wednesday 10:00-11:45 |
L10 | Diffusion applications: FRAP, Particle concentration estimation L10-2020, LN pages 130-145, see also L10-2019 | ||
Wednesday 13:15-15:00 |
E10 | Image classification | ||
Week 6/20 | Monday 10:00-11:45 |
L11 |
RICS and SPRIA, analysis of TEM images, L11-2020, LN pages 145-167, see also L11-2019 LN pages 145-167 |
|
Monday 13:15-15:00 |
E11 | Work on projects | ||
Wednesday 10:00-11:45 |
L12 |
Point processes LN 6,7 |
||
Wednesday 13:15-15:00 |
E12 | Work on projects | ||
Week 7/21 | Monday 10:00-11:45 |
L13 | Project seminars | |
Monday 13:15-15:00 |
E13 | Project seminars in room |
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Wednesday 10:00-11:45 |
L14 | Project seminars | ||
Wednesday 13:15-15:00 |
E14 | Project seminars in room |
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Week |
Monday 10:00-11:45 |
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Wednesday 10:00-11:45 |
Computer labs
The exercises will be done in Matlab, and some knowledge of Matlab is assumed. If you need an introduction, see Learning MATLAB, Tobin A. Driscoll ISBN: 978-0-898716-83-2 (The book is published by SIAM).
Most computer exercises will use functions written specifically for this course. These are collected in the following file: TMS016_Matlab.zip. Download this file and add the path to the folder in matlab: addpath('path_to_folder'). Then run the command tms016path to set the path to the files.
Data used in the exercies are colleded here: TMS016_Data.zip.
Reference literature:
Learning MATLAB, Tobin A. Driscoll ISBN: 978-0-898716-83-2 (The book is published by SIAM).
Course summary:
Date | Details | Due |
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